PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s0550.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 266aa MW: 30121.3 Da PI: 4.5237

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s0550.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101	7.2e-32	119	175	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK +k+s++prsYYrCt ++C++kk+ve+s++dp+++++tYeg H h Kaladp0011s0550.1.p 119 EDGYKWRKYGQKFIKNSPNPRSYYRCTNPRCSAKKQVEKSSDDPETFIVTYEGLHLH 175 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-30	109	175	IPR003657	WRKY domain
PROSITE profile	PS50811	27.129	113	175	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-27	116	175	IPR003657	WRKY domain
SMART	SM00774	3.6E-36	118	177	IPR003657	WRKY domain
Pfam	PF03106	3.9E-26	119	175	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MDNESFEYWS AAEGDEILQE LLDDISPFFL IPSNGDSDDI DYGRWSLNEL LLSDVPYSGP 60 TVKDIEQALL EAGKRQRNEE EAKANHRASS MLENNDDSFR IENKYTLKMK SCGNGVMAED 120 GYKWRKYGQK FIKNSPNPRS YYRCTNPRCS AKKQVEKSSD DPETFIVTYE GLHLHFTYPY 180 LLQNQAPAAS ASAQSLYDPP TKKQKTTQAD GSNNEAAQLH TYQEQLLLEE CSFFDEAHIG 240 MESQGLLQDV VPLMIRNSTS YGFSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	117	179	13	75	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006480891.1	2e-68	PREDICTED: probable WRKY transcription factor 49
TrEMBL	V4US32	2e-68	V4US32_9R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	3e-38	WRKY DNA-binding protein 49

Link Out ? help Back to Top
Phytozome	Kaladp0011s0550.1.p